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How to install vcfremapper via python pip




vcfremapper - Package to map VCFs between genome builds, it belongs to Classifiers:

- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install vcfremapper to support your project or you get trouble as ModuleNotFoundError: No module named "vcfremapper" or ImportError: cannot import name "vcfremapper" in your project, let follow this tutorial to install vcfremapper



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_vcfremapper_env

- Active the virtual environment

test_vcfremapper_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_vcfremapper_env

- Active the virtual environment

source test_vcfremapper_env/bin/active


Step 2: OK, now, let flow below content to start the installation vcfremapper

To install vcfremapper on Windows(CMD):

py -m pip install vcfremapper

To install vcfremapper on Unix/macOs:

pip install vcfremapper


Step 3: If you want to install a specific vcfremapper version, add ==<vcfremapper version> to the end command line

Example:

pip install vcfremapper==1.0.0


Please see the version list below table:

VersionReleased dateCommand
vcfremapper 1.0.52020-11-17T22:27:41Windows:

py -m pip install vcfremapper==1.0.5

Unix/macOs:

pip install vcfremapper==1.0.5

vcfremapper 1.0.42019-10-01T20:11:50Windows:

py -m pip install vcfremapper==1.0.4

Unix/macOs:

pip install vcfremapper==1.0.4

vcfremapper 1.0.32019-09-30T23:11:55Windows:

py -m pip install vcfremapper==1.0.3

Unix/macOs:

pip install vcfremapper==1.0.3

vcfremapper 1.0.22019-03-05T21:55:29Windows:

py -m pip install vcfremapper==1.0.2

Unix/macOs:

pip install vcfremapper==1.0.2

vcfremapper 1.0.12019-03-05T21:16:46Windows:

py -m pip install vcfremapper==1.0.1

Unix/macOs:

pip install vcfremapper==1.0.1

vcfremapper 1.0.02019-03-05T21:13:35Windows:

py -m pip install vcfremapper==1.0.0

Unix/macOs:

pip install vcfremapper==1.0.0


Step 4: Otherwise, you can install vcfremapper from local archives:

Download the distribution file from vcfremapper-1.0.5.tar.gz or the specific vcfremapper version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_vcfremapper_downloaded_file>

On Unix/macOs:

pip install <path_to_vcfremapper_downloaded_file>


List distribution:


Project link:

- Homepage