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How to install scgen via python pip




scgen - ScGen - Predicting single cell perturbations., it belongs to Classifiers:

- Development Status :: 4 - Beta
- Intended Audience :: Science/Research
- Natural Language :: English
- Operating System :: MacOS
- Operating System :: MacOS :: MacOS X
- Operating System :: Microsoft
- Operating System :: Microsoft :: Windows
- Operating System :: POSIX
- Operating System :: POSIX :: Linux
- Programming Language :: Python :: 3.1
- Programming Language :: Python :: 3.9
- Programming Language :: Python :: 3.10
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install scgen to support your project or you get trouble as ModuleNotFoundError: No module named "scgen" or ImportError: cannot import name "scgen" in your project, let follow this tutorial to install scgen



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_scgen_env

- Active the virtual environment

test_scgen_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_scgen_env

- Active the virtual environment

source test_scgen_env/bin/active


Step 2: OK, now, let flow below content to start the installation scgen

To install scgen on Windows(CMD):

py -m pip install scgen

To install scgen on Unix/macOs:

pip install scgen


Step 3: If you want to install a specific scgen version, add ==<scgen version> to the end command line

Example:

pip install scgen==1.0.0


Please see the version list below table:

VersionReleased dateCommand
scgen 2.1.02022-04-25T17:02:50Windows:

py -m pip install scgen==2.1.0

Unix/macOs:

pip install scgen==2.1.0

scgen 2.0.02021-04-30T11:38:23Windows:

py -m pip install scgen==2.0.0

Unix/macOs:

pip install scgen==2.0.0

scgen 1.1.52020-08-02T04:57:28Windows:

py -m pip install scgen==1.1.5

Unix/macOs:

pip install scgen==1.1.5

scgen 1.1.42019-11-15T17:53:57Windows:

py -m pip install scgen==1.1.4

Unix/macOs:

pip install scgen==1.1.4

scgen 1.1.32019-08-22T11:05:21Windows:

py -m pip install scgen==1.1.3

Unix/macOs:

pip install scgen==1.1.3

scgen 1.1.22019-08-21T12:41:26Windows:

py -m pip install scgen==1.1.2

Unix/macOs:

pip install scgen==1.1.2

scgen 1.1.12019-07-31T12:59:46Windows:

py -m pip install scgen==1.1.1

Unix/macOs:

pip install scgen==1.1.1

scgen 1.1.02019-07-29T14:35:52Windows:

py -m pip install scgen==1.1.0

Unix/macOs:

pip install scgen==1.1.0

scgen 1.0.02019-02-23T11:30:28Windows:

py -m pip install scgen==1.0.0

Unix/macOs:

pip install scgen==1.0.0


Step 4: Otherwise, you can install scgen from local archives:

Download the distribution file from scgen-2.1.0.tar.gz or the specific scgen version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_scgen_downloaded_file>

On Unix/macOs:

pip install <path_to_scgen_downloaded_file>


List distribution:


Project link:

- Homepage
- Documentation