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How to install zither via python pip




zither - Command-line tool to pull raw depths and alt freqs from BAM file(s) based on an existing VCF, writing output as new VCF to stdout., it belongs to Classifiers:

- Development Status :: 4 - Beta
- Environment :: Console
- Intended Audience :: Science/Research
- License :: OSI Approved :: Apache Software License
- Operating System :: Unix
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install zither to support your project or you get trouble as ModuleNotFoundError: No module named "zither" or ImportError: cannot import name "zither" in your project, let follow this tutorial to install zither



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_zither_env

- Active the virtual environment

test_zither_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_zither_env

- Active the virtual environment

source test_zither_env/bin/active


Step 2: OK, now, let flow below content to start the installation zither

To install zither on Windows(CMD):

py -m pip install zither

To install zither on Unix/macOs:

pip install zither


Step 3: If you want to install a specific zither version, add ==<zither version> to the end command line

Example:

pip install zither==0.2


Please see the version list below table:

VersionReleased dateCommand
zither 0.22015-09-03T13:03:21Windows:

py -m pip install zither==0.2

Unix/macOs:

pip install zither==0.2


Step 4: Otherwise, you can install zither from local archives:

Download the distribution file from zither-0.2.tar.gz or the specific zither version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_zither_downloaded_file>

On Unix/macOs:

pip install <path_to_zither_downloaded_file>


List distribution:


Project link:

- Homepage