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How to install tuncat via python pip




tuncat - Temporal Unmixing of Calcium Traces (TUnCaT) is an automatic algorithm to decontaminate false transients from temporal traces generated from fluorescent calcium imaging videos., it belongs to Classifiers:

- Intended Audience :: End Users/Desktop
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install tuncat to support your project or you get trouble as ModuleNotFoundError: No module named "tuncat" or ImportError: cannot import name "tuncat" in your project, let follow this tutorial to install tuncat



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_tuncat_env

- Active the virtual environment

test_tuncat_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_tuncat_env

- Active the virtual environment

source test_tuncat_env/bin/active


Step 2: OK, now, let flow below content to start the installation tuncat

To install tuncat on Windows(CMD):

py -m pip install tuncat

To install tuncat on Unix/macOs:

pip install tuncat


Step 3: If you want to install a specific tuncat version, add ==<tuncat version> to the end command line

Example:

pip install tuncat==1.0


Please see the version list below table:

VersionReleased dateCommand
tuncat 1.0.32022-01-12T02:25:44Windows:

py -m pip install tuncat==1.0.3

Unix/macOs:

pip install tuncat==1.0.3

tuncat 1.0.22021-12-16T05:39:24Windows:

py -m pip install tuncat==1.0.2

Unix/macOs:

pip install tuncat==1.0.2

tuncat 1.0.12021-12-16T05:05:26Windows:

py -m pip install tuncat==1.0.1

Unix/macOs:

pip install tuncat==1.0.1

tuncat 1.02021-12-16T04:29:55Windows:

py -m pip install tuncat==1.0

Unix/macOs:

pip install tuncat==1.0


Step 4: Otherwise, you can install tuncat from local archives:

Download the distribution file from tuncat-1.0.3.tar.gz or the specific tuncat version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_tuncat_downloaded_file>

On Unix/macOs:

pip install <path_to_tuncat_downloaded_file>


List distribution:


Project link:

- Homepage
- Citation
- Paper
- Source Code