How to install tskit via python pip

- Development Status :: 5 - Production/Stable
- Environment :: Other Environment
- Intended Audience :: Science/Research
- Operating System :: MacOS
- Operating System :: MacOS :: MacOS X
- Operating System :: Microsoft
- Operating System :: Microsoft :: Windows
- Operating System :: POSIX
- Programming Language :: C
- Programming Language :: Python :: 3 :: Only
- Programming Language :: Python :: 3.1
- Programming Language :: Python :: 3.10
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install tskit to support your project or you get trouble as ModuleNotFoundError: No module named "tskit" or ImportError: cannot import name "tskit" in your project, let follow this tutorial to install tskit

Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel

py -m pip install --user virtualenv

py -m venv test_tskit_env

test_tskit_env\Scripts\active

pip3 install virtualenv

python3 -m venv test_tskit_env

source test_tskit_env/bin/active

Step 2: OK, now, let flow below content to start the installation tskit

To install tskit on Windows(CMD):

py -m pip install tskit

To install tskit on Unix/macOs:

pip install tskit

Step 3: If you want to install a specific tskit version, add ==<tskit version> to the end command line

Example:

pip install tskit==0.0.0                                                                          yanked

Please see the version list below table:

py -m pip install tskit==0.5.2

pip install tskit==0.5.2

py -m pip install tskit==0.5.1

pip install tskit==0.5.1

py -m pip install tskit==0.5.0

pip install tskit==0.5.0

py -m pip install tskit==0.4.1

pip install tskit==0.4.1

py -m pip install tskit==0.4.0

pip install tskit==0.4.0

py -m pip install tskit==0.3.7

pip install tskit==0.3.7

py -m pip install tskit==0.3.6

pip install tskit==0.3.6

py -m pip install tskit==0.3.5

pip install tskit==0.3.5

py -m pip install tskit==0.3.4

pip install tskit==0.3.4

py -m pip install tskit==0.3.3

pip install tskit==0.3.3

py -m pip install tskit==0.3.2

pip install tskit==0.3.2

py -m pip install tskit==0.3.1

pip install tskit==0.3.1

py -m pip install tskit==0.3.0

pip install tskit==0.3.0

py -m pip install tskit==0.2.3

pip install tskit==0.2.3

py -m pip install tskit==0.2.2

pip install tskit==0.2.2

py -m pip install tskit==0.2.1

pip install tskit==0.2.1

py -m pip install tskit==0.1.5

pip install tskit==0.1.5

py -m pip install tskit==0.1.4

pip install tskit==0.1.4

py -m pip install tskit==0.1.3

pip install tskit==0.1.3

py -m pip install tskit==0.1.2

pip install tskit==0.1.2

py -m pip install tskit==0.1.1

pip install tskit==0.1.1

py -m pip install tskit==0.1.0

pip install tskit==0.1.0

py -m pip install tskit==0.0.0                                                                          yanked

pip install tskit==0.0.0                                                                          yanked

Step 4: Otherwise, you can install tskit from local archives:

Download the distribution file from tskit-0.5.2.tar.gz or the specific tskit version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_tskit_downloaded_file>

On Unix/macOs:

pip install <path_to_tskit_downloaded_file>

List distribution:

Project link:

- Homepage
- Bug Tracker
- Changelog
- Documentation
- GitHub