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How to install tirmite via python pip




tirmite - Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons., it belongs to Classifiers:

- Development Status :: 4 - Beta
- Environment :: Console
- Intended Audience :: Science/Research
- Natural Language :: English
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install tirmite to support your project or you get trouble as ModuleNotFoundError: No module named "tirmite" or ImportError: cannot import name "tirmite" in your project, let follow this tutorial to install tirmite



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_tirmite_env

- Active the virtual environment

test_tirmite_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_tirmite_env

- Active the virtual environment

source test_tirmite_env/bin/active


Step 2: OK, now, let flow below content to start the installation tirmite

To install tirmite on Windows(CMD):

py -m pip install tirmite

To install tirmite on Unix/macOs:

pip install tirmite


Step 3: If you want to install a specific tirmite version, add ==<tirmite version> to the end command line

Example:

pip install tirmite==0.1.0


Please see the version list below table:

VersionReleased dateCommand
tirmite 1.1.42019-12-25T08:10:28Windows:

py -m pip install tirmite==1.1.4

Unix/macOs:

pip install tirmite==1.1.4

tirmite 1.1.32018-11-29T08:43:18Windows:

py -m pip install tirmite==1.1.3

Unix/macOs:

pip install tirmite==1.1.3

tirmite 1.1.12018-11-05T18:57:51Windows:

py -m pip install tirmite==1.1.1

Unix/macOs:

pip install tirmite==1.1.1

tirmite 1.1.02017-10-11T01:32:00Windows:

py -m pip install tirmite==1.1.0

Unix/macOs:

pip install tirmite==1.1.0

tirmite 1.0.02017-10-02T08:03:13Windows:

py -m pip install tirmite==1.0.0

Unix/macOs:

pip install tirmite==1.0.0

tirmite 0.1.02017-09-01T02:53:43Windows:

py -m pip install tirmite==0.1.0

Unix/macOs:

pip install tirmite==0.1.0


Step 4: Otherwise, you can install tirmite from local archives:

Download the distribution file from tirmite-1.1.4.tar.gz or the specific tirmite version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_tirmite_downloaded_file>

On Unix/macOs:

pip install <path_to_tirmite_downloaded_file>


List distribution:


Project link:

- Homepage