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How to install svim via python pip




svim - A structural variant caller for long reads., it belongs to Classifiers:

- License :: OSI Approved :: GNU General Public License v3 (GPLv3)
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install svim to support your project or you get trouble as ModuleNotFoundError: No module named "svim" or ImportError: cannot import name "svim" in your project, let follow this tutorial to install svim



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_svim_env

- Active the virtual environment

test_svim_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_svim_env

- Active the virtual environment

source test_svim_env/bin/active


Step 2: OK, now, let flow below content to start the installation svim

To install svim on Windows(CMD):

py -m pip install svim

To install svim on Unix/macOs:

pip install svim


Step 3: If you want to install a specific svim version, add ==<svim version> to the end command line

Example:

pip install svim==0.3


Please see the version list below table:

VersionReleased dateCommand
svim 2.0.02021-06-18T08:20:43Windows:

py -m pip install svim==2.0.0

Unix/macOs:

pip install svim==2.0.0

svim 1.4.22020-10-08T11:32:33Windows:

py -m pip install svim==1.4.2

Unix/macOs:

pip install svim==1.4.2

svim 1.4.12020-07-27T16:05:23Windows:

py -m pip install svim==1.4.1

Unix/macOs:

pip install svim==1.4.1

svim 1.4.02020-05-27T14:24:12Windows:

py -m pip install svim==1.4.0

Unix/macOs:

pip install svim==1.4.0

svim 1.3.12020-03-30T14:03:07Windows:

py -m pip install svim==1.3.1

Unix/macOs:

pip install svim==1.3.1

svim 1.3.02020-01-20T14:42:11Windows:

py -m pip install svim==1.3.0

Unix/macOs:

pip install svim==1.3.0

svim 1.2.02019-07-25T08:50:43Windows:

py -m pip install svim==1.2.0

Unix/macOs:

pip install svim==1.2.0

svim 1.1.12019-06-25T14:58:58Windows:

py -m pip install svim==1.1.1

Unix/macOs:

pip install svim==1.1.1

svim 1.1.02019-06-21T11:49:11Windows:

py -m pip install svim==1.1.0

Unix/macOs:

pip install svim==1.1.0

svim 1.0.02019-04-29T13:33:08Windows:

py -m pip install svim==1.0.0

Unix/macOs:

pip install svim==1.0.0

svim 0.5.02019-03-06T15:01:20Windows:

py -m pip install svim==0.5.0

Unix/macOs:

pip install svim==0.5.0

svim 0.4.42019-02-11T15:16:28Windows:

py -m pip install svim==0.4.4

Unix/macOs:

pip install svim==0.4.4

svim 0.4.32019-01-08T01:30:06Windows:

py -m pip install svim==0.4.3

Unix/macOs:

pip install svim==0.4.3

svim 0.4.22018-12-11T00:34:34Windows:

py -m pip install svim==0.4.2

Unix/macOs:

pip install svim==0.4.2

svim 0.4.12018-12-01T03:45:28Windows:

py -m pip install svim==0.4.1

Unix/macOs:

pip install svim==0.4.1

svim 0.4.02018-12-01T02:28:30Windows:

py -m pip install svim==0.4.0

Unix/macOs:

pip install svim==0.4.0

svim 0.3.12018-11-21T00:38:25Windows:

py -m pip install svim==0.3.1

Unix/macOs:

pip install svim==0.3.1

svim 0.32018-07-27T12:14:25Windows:

py -m pip install svim==0.3

Unix/macOs:

pip install svim==0.3


Step 4: Otherwise, you can install svim from local archives:

Download the distribution file from svim-2.0.0.tar.gz or the specific svim version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_svim_downloaded_file>

On Unix/macOs:

pip install <path_to_svim_downloaded_file>


List distribution:


Project link:

- Homepage