How to install squidpy via python pip

- Development Status :: 5 - Production/Stable
- Environment :: Console
- Framework :: Jupyter
- Intended Audience :: Science/Research
- License :: OSI Approved :: BSD License
- Natural Language :: English
- Operating System :: MacOS
- Operating System :: MacOS :: MacOS X
- Operating System :: POSIX
- Operating System :: POSIX :: Linux
- Programming Language :: Python :: 3.1
- Programming Language :: Python :: 3.10
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics
- Topic :: Scientific/Engineering :: Visualization
- Typing :: Typed

When you know about this project and you want to new install squidpy to support your project or you get trouble as ModuleNotFoundError: No module named "squidpy" or ImportError: cannot import name "squidpy" in your project, let follow this tutorial to install squidpy

Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel

py -m pip install --user virtualenv

py -m venv test_squidpy_env

test_squidpy_env\Scripts\active

pip3 install virtualenv

python3 -m venv test_squidpy_env

source test_squidpy_env/bin/active

Step 2: OK, now, let flow below content to start the installation squidpy

To install squidpy on Windows(CMD):

py -m pip install squidpy

To install squidpy on Unix/macOs:

pip install squidpy

Step 3: If you want to install a specific squidpy version, add ==<squidpy version> to the end command line

Example:

pip install squidpy==1.0.0

Please see the version list below table:

py -m pip install squidpy==1.2.2

pip install squidpy==1.2.2

py -m pip install squidpy==1.2.1

pip install squidpy==1.2.1

py -m pip install squidpy==1.2.0

pip install squidpy==1.2.0

py -m pip install squidpy==1.1.2

pip install squidpy==1.1.2

py -m pip install squidpy==1.1.1

pip install squidpy==1.1.1

py -m pip install squidpy==1.1.0

pip install squidpy==1.1.0

py -m pip install squidpy==1.0.1

pip install squidpy==1.0.1

py -m pip install squidpy==1.0.0

pip install squidpy==1.0.0

Step 4: Otherwise, you can install squidpy from local archives:

Download the distribution file from squidpy-1.2.2.tar.gz or the specific squidpy version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_squidpy_downloaded_file>

On Unix/macOs:

pip install <path_to_squidpy_downloaded_file>

List distribution:

Project link:

- Homepage
- Download
- Documentation
- Source Code