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How to install SpaGCN via python pip




SpaGCN - SpaGCN: Integrating gene expression and histology to identify spatial domains and spatially variable genes using graph convolutional networks, it belongs to Classifiers:

- License :: OSI Approved

When you know about this project and you want to new install SpaGCN to support your project or you get trouble as ModuleNotFoundError: No module named "SpaGCN" or ImportError: cannot import name "SpaGCN" in your project, let follow this tutorial to install SpaGCN



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_SpaGCN_env

- Active the virtual environment

test_SpaGCN_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_SpaGCN_env

- Active the virtual environment

source test_SpaGCN_env/bin/active


Step 2: OK, now, let flow below content to start the installation SpaGCN

To install SpaGCN on Windows(CMD):

py -m pip install SpaGCN

To install SpaGCN on Unix/macOs:

pip install SpaGCN


Step 3: If you want to install a specific SpaGCN version, add ==<SpaGCN version> to the end command line

Example:

pip install SpaGCN==0.0.5                                                                          yanked


Please see the version list below table:

VersionReleased dateCommand
SpaGCN 1.2.52022-05-26T15:24:01Windows:

py -m pip install SpaGCN==1.2.5

Unix/macOs:

pip install SpaGCN==1.2.5

SpaGCN 1.2.42022-05-25T18:53:26Windows:

py -m pip install SpaGCN==1.2.4

Unix/macOs:

pip install SpaGCN==1.2.4

SpaGCN 1.2.22021-11-19T00:36:15Windows:

py -m pip install SpaGCN==1.2.2

Unix/macOs:

pip install SpaGCN==1.2.2

SpaGCN 1.2.12021-11-04T23:44:55Windows:

py -m pip install SpaGCN==1.2.1

Unix/macOs:

pip install SpaGCN==1.2.1

SpaGCN 0.0.5 yanked2020-12-07T17:37:41Windows:

py -m pip install SpaGCN==0.0.5                                                                          yanked

Unix/macOs:

pip install SpaGCN==0.0.5                                                                          yanked


Step 4: Otherwise, you can install SpaGCN from local archives:

Download the distribution file from SpaGCN-1.2.5.tar.gz or the specific SpaGCN version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_SpaGCN_downloaded_file>

On Unix/macOs:

pip install <path_to_SpaGCN_downloaded_file>


List distribution:


Project link:

- Homepage