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How to install snvoter via python pip




snvoter - A top up tool to enhance SNV calling from Nanopore sequencing data., it belongs to Classifiers:

- License :: OSI Approved :: GNU General Public License v3 (GPLv3)
- Operating System :: POSIX :: Linux

When you know about this project and you want to new install snvoter to support your project or you get trouble as ModuleNotFoundError: No module named "snvoter" or ImportError: cannot import name "snvoter" in your project, let follow this tutorial to install snvoter



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_snvoter_env

- Active the virtual environment

test_snvoter_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_snvoter_env

- Active the virtual environment

source test_snvoter_env/bin/active


Step 2: OK, now, let flow below content to start the installation snvoter

To install snvoter on Windows(CMD):

py -m pip install snvoter

To install snvoter on Unix/macOs:

pip install snvoter


Step 3: If you want to install a specific snvoter version, add ==<snvoter version> to the end command line

Example:

pip install snvoter==0.0                                                                          yanked


Please see the version list below table:

VersionReleased dateCommand
snvoter 1.02021-01-26T21:35:39Windows:

py -m pip install snvoter==1.0

Unix/macOs:

pip install snvoter==1.0

snvoter 0.1.22020-08-19T07:55:29Windows:

py -m pip install snvoter==0.1.2

Unix/macOs:

pip install snvoter==0.1.2

snvoter 0.1.12020-08-19T06:58:20Windows:

py -m pip install snvoter==0.1.1

Unix/macOs:

pip install snvoter==0.1.1

snvoter 0.0 yanked2020-08-18T22:19:52Windows:

py -m pip install snvoter==0.0                                                                          yanked

Unix/macOs:

pip install snvoter==0.0                                                                          yanked


Step 4: Otherwise, you can install snvoter from local archives:

Download the distribution file from snvoter-1.0.tar.gz or the specific snvoter version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_snvoter_downloaded_file>

On Unix/macOs:

pip install <path_to_snvoter_downloaded_file>


List distribution:


Project link:

- GitHub