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How to install runHiC via python pip

runHiC - A easy-to-use Hi-C processing software supporting distributed computation, it belongs to Classifiers:

- Intended Audience :: Science/Research
- License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
- Operating System :: POSIX
- Programming Language :: Python :: 3 :: Only
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install runHiC to support your project or you get trouble as ModuleNotFoundError: No module named "runHiC" or ImportError: cannot import name "runHiC" in your project, let follow this tutorial to install runHiC

Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel

Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_runHiC_env

- Active the virtual environment

test_runHiC_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_runHiC_env

- Active the virtual environment

source test_runHiC_env/bin/active

Step 2: OK, now, let flow below content to start the installation runHiC

To install runHiC on Windows(CMD):

py -m pip install runHiC

To install runHiC on Unix/macOs:

pip install runHiC

Step 3: If you want to install a specific runHiC version, add ==<runHiC version> to the end command line

Example: 

pip install runHiC==0.6.0

Please see the version list below table:

VersionReleased dateCommand
runHiC 0.8.62022-05-23T16:43:40Windows:

py -m pip install runHiC==0.8.6

Unix/macOs:

pip install runHiC==0.8.6

runHiC 0.8.5.post22021-09-09T16:22:13Windows:

py -m pip install runHiC==0.8.5.post2

Unix/macOs:

pip install runHiC==0.8.5.post2

runHiC 0.8.52021-08-15T20:10:18Windows:

py -m pip install runHiC==0.8.5

Unix/macOs:

pip install runHiC==0.8.5

runHiC 0.8.4.post12021-01-18T02:51:50Windows:

py -m pip install runHiC==0.8.4.post1

Unix/macOs:

pip install runHiC==0.8.4.post1

runHiC 0.8.42021-01-03T22:42:53Windows:

py -m pip install runHiC==0.8.4

Unix/macOs:

pip install runHiC==0.8.4

runHiC 0.8.3.post12019-06-03T17:51:00Windows:

py -m pip install runHiC==0.8.3.post1

Unix/macOs:

pip install runHiC==0.8.3.post1

runHiC 0.8.32019-03-04T16:34:22Windows:

py -m pip install runHiC==0.8.3

Unix/macOs:

pip install runHiC==0.8.3

runHiC 0.8.22019-01-16T15:07:41Windows:

py -m pip install runHiC==0.8.2

Unix/macOs:

pip install runHiC==0.8.2

runHiC 0.8.12018-12-23T19:19:06Windows:

py -m pip install runHiC==0.8.1

Unix/macOs:

pip install runHiC==0.8.1

runHiC 0.8.0.post32018-09-26T21:11:39Windows:

py -m pip install runHiC==0.8.0.post3

Unix/macOs:

pip install runHiC==0.8.0.post3

runHiC 0.8.0.post22018-09-22T17:52:41Windows:

py -m pip install runHiC==0.8.0.post2

Unix/macOs:

pip install runHiC==0.8.0.post2

runHiC 0.8.0.post12018-09-18T18:15:24Windows:

py -m pip install runHiC==0.8.0.post1

Unix/macOs:

pip install runHiC==0.8.0.post1

runHiC 0.8.02018-09-17T01:17:45Windows:

py -m pip install runHiC==0.8.0

Unix/macOs:

pip install runHiC==0.8.0

runHiC 0.7.0-r22017-11-07T05:55:40Windows:

py -m pip install runHiC==0.7.0-r2

Unix/macOs:

pip install runHiC==0.7.0-r2

runHiC 0.7.0-r12017-10-30T03:02:09Windows:

py -m pip install runHiC==0.7.0-r1

Unix/macOs:

pip install runHiC==0.7.0-r1

runHiC 0.6.6-r22016-05-04T09:18:53Windows:

py -m pip install runHiC==0.6.6-r2

Unix/macOs:

pip install runHiC==0.6.6-r2

runHiC 0.6.6-r12015-11-10T01:13:20Windows:

py -m pip install runHiC==0.6.6-r1

Unix/macOs:

pip install runHiC==0.6.6-r1

runHiC 0.6.62015-11-06T14:49:50Windows:

py -m pip install runHiC==0.6.6

Unix/macOs:

pip install runHiC==0.6.6

runHiC 0.6.52015-09-29T01:02:24Windows:

py -m pip install runHiC==0.6.5

Unix/macOs:

pip install runHiC==0.6.5

runHiC 0.6.42015-09-21T00:53:32Windows:

py -m pip install runHiC==0.6.4

Unix/macOs:

pip install runHiC==0.6.4

runHiC 0.6.32015-09-16T07:00:09Windows:

py -m pip install runHiC==0.6.3

Unix/macOs:

pip install runHiC==0.6.3

runHiC 0.6.22015-08-21T11:58:22Windows:

py -m pip install runHiC==0.6.2

Unix/macOs:

pip install runHiC==0.6.2

runHiC 0.6.12015-07-21T12:19:01Windows:

py -m pip install runHiC==0.6.1

Unix/macOs:

pip install runHiC==0.6.1

runHiC 0.6.02015-06-16T09:22:16Windows:

py -m pip install runHiC==0.6.0

Unix/macOs:

pip install runHiC==0.6.0

Step 4: Otherwise, you can install runHiC from local archives:

Download the distribution file from runHiC-0.8.6.tar.gz or the specific runHiC version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_runHiC_downloaded_file>

On Unix/macOs:

pip install <path_to_runHiC_downloaded_file>

List distribution:

Project link:

- Homepage

 

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