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How to install picardtools via python pip




picardtools - python3 interface with Picard Tools from Broad institute, it belongs to Classifiers:

- License :: OSI Approved
- License :: OSI Approved :: MIT License
- Operating System :: OS Independent
- Programming Language :: Python
- Programming Language :: Python :: 3

When you know about this project and you want to new install picardtools to support your project or you get trouble as ModuleNotFoundError: No module named "picardtools" or ImportError: cannot import name "picardtools" in your project, let follow this tutorial to install picardtools



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_picardtools_env

- Active the virtual environment

test_picardtools_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_picardtools_env

- Active the virtual environment

source test_picardtools_env/bin/active


Step 2: OK, now, let flow below content to start the installation picardtools

To install picardtools on Windows(CMD):

py -m pip install picardtools

To install picardtools on Unix/macOs:

pip install picardtools


Step 3: If you want to install a specific picardtools version, add ==<picardtools version> to the end command line

Example:

pip install picardtools==0.0.1


Please see the version list below table:

VersionReleased dateCommand
picardtools 0.1.12020-10-23T00:26:42Windows:

py -m pip install picardtools==0.1.1

Unix/macOs:

pip install picardtools==0.1.1

picardtools 0.1.02019-07-10T18:25:35Windows:

py -m pip install picardtools==0.1.0

Unix/macOs:

pip install picardtools==0.1.0

picardtools 0.0.12019-07-10T18:19:30Windows:

py -m pip install picardtools==0.0.1

Unix/macOs:

pip install picardtools==0.0.1


Step 4: Otherwise, you can install picardtools from local archives:

Download the distribution file from picardtools-0.1.1.tar.gz or the specific picardtools version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_picardtools_downloaded_file>

On Unix/macOs:

pip install <path_to_picardtools_downloaded_file>


List distribution:


Project link:

- Homepage