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How to install LAFITE via python pip




LAFITE - Nanopore Direct RNA-seq Transcriptome Assembly, it belongs to Classifiers:

- License :: OSI Approved :: Apache Software License
- Natural Language :: English

When you know about this project and you want to new install LAFITE to support your project or you get trouble as ModuleNotFoundError: No module named "LAFITE" or ImportError: cannot import name "LAFITE" in your project, let follow this tutorial to install LAFITE



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_LAFITE_env

- Active the virtual environment

test_LAFITE_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_LAFITE_env

- Active the virtual environment

source test_LAFITE_env/bin/active


Step 2: OK, now, let flow below content to start the installation LAFITE

To install LAFITE on Windows(CMD):

py -m pip install LAFITE

To install LAFITE on Unix/macOs:

pip install LAFITE


Step 3: If you want to install a specific LAFITE version, add ==<LAFITE version> to the end command line

Example:

pip install LAFITE==1.0.1


Please see the version list below table:

VersionReleased dateCommand
LAFITE 1.0.12022-06-03T16:36:12Windows:

py -m pip install LAFITE==1.0.1

Unix/macOs:

pip install LAFITE==1.0.1


Step 4: Otherwise, you can install LAFITE from local archives:

Download the distribution file from LAFITE-1.0.1.tar.gz or the specific LAFITE version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_LAFITE_downloaded_file>

On Unix/macOs:

pip install <path_to_LAFITE_downloaded_file>


List distribution:

- LAFITE-1.0.1-py3-none-any.whl (python version >=3.7)
- LAFITE-1.0.1.tar.gz (python version >=3.7)
- LAFITE-1.0.2-py3-none-any.whl (python version >=3.11)
- LAFITE-1.0.2.tar.gz (python version >=3.11)


Project link:

- Homepage