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How to install gdc-readgroups via python pip




gdc-readgroups - From a BAM, convert each readgroup to a json/tsv object needed to create a GDC Read Group node., it belongs to Classifiers:

- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install gdc-readgroups to support your project or you get trouble as ModuleNotFoundError: No module named "gdc-readgroups" or ImportError: cannot import name "gdc-readgroups" in your project, let follow this tutorial to install gdc-readgroups



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_gdc-readgroups_env

- Active the virtual environment

test_gdc-readgroups_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_gdc-readgroups_env

- Active the virtual environment

source test_gdc-readgroups_env/bin/active


Step 2: OK, now, let flow below content to start the installation gdc-readgroups

To install gdc-readgroups on Windows(CMD):

py -m pip install gdc-readgroups

To install gdc-readgroups on Unix/macOs:

pip install gdc-readgroups


Step 3: If you want to install a specific gdc-readgroups version, add ==<gdc-readgroups version> to the end command line

Example:

pip install gdc-readgroups==0.4


Please see the version list below table:

VersionReleased dateCommand
gdc-readgroups 0.42019-03-07T16:58:11Windows:

py -m pip install gdc-readgroups==0.4

Unix/macOs:

pip install gdc-readgroups==0.4


Step 4: Otherwise, you can install gdc-readgroups from local archives:

Download the distribution file from gdc_readgroups-0.4.tar.gz or the specific gdc-readgroups version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_gdc-readgroups_downloaded_file>

On Unix/macOs:

pip install <path_to_gdc-readgroups_downloaded_file>


List distribution:

- gdc_readgroups-0.4-py2.py3-none-any.whl
- gdc_readgroups-0.4.tar.gz


Project link:

- Homepage