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How to install fusionfusion via python pip




fusionfusion - Python tools for extracting highly confident fusion transcripts from the results of several RNA-seq alignment tools., it belongs to Classifiers:

- License :: OSI Approved :: GNU General Public License v3 (GPLv3)
- Operating System :: Unix
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install fusionfusion to support your project or you get trouble as ModuleNotFoundError: No module named "fusionfusion" or ImportError: cannot import name "fusionfusion" in your project, let follow this tutorial to install fusionfusion



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_fusionfusion_env

- Active the virtual environment

test_fusionfusion_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_fusionfusion_env

- Active the virtual environment

source test_fusionfusion_env/bin/active


Step 2: OK, now, let flow below content to start the installation fusionfusion

To install fusionfusion on Windows(CMD):

py -m pip install fusionfusion

To install fusionfusion on Unix/macOs:

pip install fusionfusion


Step 3: If you want to install a specific fusionfusion version, add ==<fusionfusion version> to the end command line

Example:

pip install fusionfusion==0.4.0


Please see the version list below table:

VersionReleased dateCommand
fusionfusion 0.5.02019-05-18T07:13:17Windows:

py -m pip install fusionfusion==0.5.0

Unix/macOs:

pip install fusionfusion==0.5.0

fusionfusion 0.4.02018-01-28T23:57:36Windows:

py -m pip install fusionfusion==0.4.0

Unix/macOs:

pip install fusionfusion==0.4.0


Step 4: Otherwise, you can install fusionfusion from local archives:

Download the distribution file from fusionfusion-0.5.0.tar.gz or the specific fusionfusion version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_fusionfusion_downloaded_file>

On Unix/macOs:

pip install <path_to_fusionfusion_downloaded_file>


List distribution:

- fusionfusion-0.4.0.tar.gz
- fusionfusion-0.5.0b1.tar.gz
- fusionfusion-0.5.0rc1.tar.gz
- fusionfusion-0.5.0.tar.gz


Project link:

- Homepage