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How to install EMIRGE via python pip




EMIRGE - EMIRGE reconstructs full length sequences from short sequencing reads, it belongs to Classifiers:

- Environment :: Console
- Intended Audience :: Science/Research
- License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
- Operating System :: POSIX
- Programming Language :: C
- Programming Language :: Cython
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install EMIRGE to support your project or you get trouble as ModuleNotFoundError: No module named "EMIRGE" or ImportError: cannot import name "EMIRGE" in your project, let follow this tutorial to install EMIRGE



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_EMIRGE_env

- Active the virtual environment

test_EMIRGE_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_EMIRGE_env

- Active the virtual environment

source test_EMIRGE_env/bin/active


Step 2: OK, now, let flow below content to start the installation EMIRGE

To install EMIRGE on Windows(CMD):

py -m pip install EMIRGE

To install EMIRGE on Unix/macOs:

pip install EMIRGE


Step 3: If you want to install a specific EMIRGE version, add ==<EMIRGE version> to the end command line

Example:

pip install EMIRGE==0.6.2a1                                                        pre-release


Please see the version list below table:

VersionReleased dateCommand
EMIRGE 0.61.12016-12-03T02:19:34Windows:

py -m pip install EMIRGE==0.61.1

Unix/macOs:

pip install EMIRGE==0.61.1

EMIRGE 0.61.02016-11-09T20:22:42Windows:

py -m pip install EMIRGE==0.61.0

Unix/macOs:

pip install EMIRGE==0.61.0

EMIRGE 0.60.42016-10-13T23:46:23Windows:

py -m pip install EMIRGE==0.60.4

Unix/macOs:

pip install EMIRGE==0.60.4

EMIRGE 0.60.32016-04-01T19:28:32Windows:

py -m pip install EMIRGE==0.60.3

Unix/macOs:

pip install EMIRGE==0.60.3

EMIRGE 0.60.22016-03-18T20:11:23Windows:

py -m pip install EMIRGE==0.60.2

Unix/macOs:

pip install EMIRGE==0.60.2


Step 4: Otherwise, you can install EMIRGE from local archives:

Download the distribution file from EMIRGE-0.61.1.tar.gz or the specific EMIRGE version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_EMIRGE_downloaded_file>

On Unix/macOs:

pip install <path_to_EMIRGE_downloaded_file>


List distribution:

- EMIRGE-0.6.2a5.tar.gz
- EMIRGE-0.6.2a6.tar.gz
- EMIRGE-0.6.2a7.tar.gz
- EMIRGE-0.60.2a3.tar.gz
- EMIRGE-0.60.2a4.tar.gz
- EMIRGE-0.60.2a5.tar.gz
- EMIRGE-0.60.2a6.tar.gz
- EMIRGE-0.60.2.tar.gz
- EMIRGE-0.60.3.tar.gz
- EMIRGE-0.60.4.tar.gz
- EMIRGE-0.61.1.tar.gz


Project link:

- Homepage