Coding With Fun
Home Docker Django Node.js Articles Python pip guide FAQ Policy
 

How to install biscot via python pip




biscot - Bionano SCaffolding Correction Tool, it belongs to Classifiers:

- Intended Audience :: Science/Research
- License :: OSI Approved :: CEA CNRS Inria Logiciel Libre License, version 2.1 (CeCILL-2.1)
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install biscot to support your project or you get trouble as ModuleNotFoundError: No module named "biscot" or ImportError: cannot import name "biscot" in your project, let follow this tutorial to install biscot



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_biscot_env

- Active the virtual environment

test_biscot_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_biscot_env

- Active the virtual environment

source test_biscot_env/bin/active


Step 2: OK, now, let flow below content to start the installation biscot

To install biscot on Windows(CMD):

py -m pip install biscot

To install biscot on Unix/macOs:

pip install biscot


Step 3: If you want to install a specific biscot version, add ==<biscot version> to the end command line

Example:

pip install biscot==2.0


Please see the version list below table:

VersionReleased dateCommand
biscot 2.3.32020-11-09T08:28:45Windows:

py -m pip install biscot==2.3.3

Unix/macOs:

pip install biscot==2.3.3

biscot 2.3.22020-09-18T14:13:14Windows:

py -m pip install biscot==2.3.2

Unix/macOs:

pip install biscot==2.3.2

biscot 2.3.12020-09-18T13:51:37Windows:

py -m pip install biscot==2.3.1

Unix/macOs:

pip install biscot==2.3.1

biscot 2.32020-05-06T12:34:56Windows:

py -m pip install biscot==2.3

Unix/macOs:

pip install biscot==2.3

biscot 2.22020-05-06T06:55:53Windows:

py -m pip install biscot==2.2

Unix/macOs:

pip install biscot==2.2

biscot 2.12020-04-27T08:29:54Windows:

py -m pip install biscot==2.1

Unix/macOs:

pip install biscot==2.1

biscot 2.02020-04-10T13:30:03Windows:

py -m pip install biscot==2.0

Unix/macOs:

pip install biscot==2.0


Step 4: Otherwise, you can install biscot from local archives:

Download the distribution file from biscot-2.3.3.tar.gz or the specific biscot version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_biscot_downloaded_file>

On Unix/macOs:

pip install <path_to_biscot_downloaded_file>


List distribution:

- biscot-2.0.tar.gz
- biscot-2.1.tar.gz
- biscot-2.2.tar.gz
- biscot-2.3.tar.gz
- biscot-2.3.1.tar.gz
- biscot-2.3.2.tar.gz
- biscot-2.3.3.tar.gz


Project link:

- Homepage
- Download