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How to install snipgenie via python pip




snipgenie - variant calling and phylogenies from microbial WGS data, it belongs to Classifiers:

- License :: OSI Approved :: GNU General Public License v3 (GPLv3)
- Operating System :: MacOS
- Operating System :: MacOS :: MacOS X
- Operating System :: Microsoft
- Operating System :: Microsoft :: Windows
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install snipgenie to support your project or you get trouble as ModuleNotFoundError: No module named "snipgenie" or ImportError: cannot import name "snipgenie" in your project, let follow this tutorial to install snipgenie



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_snipgenie_env

- Active the virtual environment

test_snipgenie_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_snipgenie_env

- Active the virtual environment

source test_snipgenie_env/bin/active


Step 2: OK, now, let flow below content to start the installation snipgenie

To install snipgenie on Windows(CMD):

py -m pip install snipgenie

To install snipgenie on Unix/macOs:

pip install snipgenie


Step 3: If you want to install a specific snipgenie version, add ==<snipgenie version> to the end command line

Example:

pip install snipgenie==0.4.0


Please see the version list below table:

VersionReleased dateCommand
snipgenie 0.5.02021-11-01T20:49:01Windows:

py -m pip install snipgenie==0.5.0

Unix/macOs:

pip install snipgenie==0.5.0

snipgenie 0.4.02021-07-16T14:06:46Windows:

py -m pip install snipgenie==0.4.0

Unix/macOs:

pip install snipgenie==0.4.0


Step 4: Otherwise, you can install snipgenie from local archives:

Download the distribution file from snipgenie-0.5.0.tar.gz or the specific snipgenie version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_snipgenie_downloaded_file>

On Unix/macOs:

pip install <path_to_snipgenie_downloaded_file>


List distribution:


Project link:

- Homepage