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How to install scythe via python pip




scythe - Find best matching set of transcripts for one-to-one orthologous genes from two or more species, it belongs to Classifiers:

- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install scythe to support your project or you get trouble as ModuleNotFoundError: No module named "scythe" or ImportError: cannot import name "scythe" in your project, let follow this tutorial to install scythe



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_scythe_env

- Active the virtual environment

test_scythe_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_scythe_env

- Active the virtual environment

source test_scythe_env/bin/active


Step 2: OK, now, let flow below content to start the installation scythe

To install scythe on Windows(CMD):

py -m pip install scythe

To install scythe on Unix/macOs:

pip install scythe


Step 3: If you want to install a specific scythe version, add ==<scythe version> to the end command line

Example:

pip install scythe==0.1a1                                                        pre-release


Please see the version list below table:

VersionReleased dateCommand

Step 4: Otherwise, you can install scythe from local archives:

Download the distribution file from scythe-0.1a1.tar.gz or the specific scythe version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_scythe_downloaded_file>

On Unix/macOs:

pip install <path_to_scythe_downloaded_file>


List distribution:


Project link: