How to install scvi via python pip

- Development Status :: 4 - Beta
- Intended Audience :: Science/Research
- Natural Language :: English
- Operating System :: MacOS
- Operating System :: MacOS :: MacOS X
- Operating System :: Microsoft
- Operating System :: Microsoft :: Windows
- Operating System :: POSIX
- Operating System :: POSIX :: Linux
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install scvi to support your project or you get trouble as ModuleNotFoundError: No module named "scvi" or ImportError: cannot import name "scvi" in your project, let follow this tutorial to install scvi

Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel

py -m pip install --user virtualenv

py -m venv test_scvi_env

test_scvi_env\Scripts\active

pip3 install virtualenv

python3 -m venv test_scvi_env

source test_scvi_env/bin/active

Step 2: OK, now, let flow below content to start the installation scvi

To install scvi on Windows(CMD):

py -m pip install scvi

To install scvi on Unix/macOs:

pip install scvi

Step 3: If you want to install a specific scvi version, add ==<scvi version> to the end command line

Example:

pip install scvi==0.1.0

Please see the version list below table:

py -m pip install scvi==0.6.8

pip install scvi==0.6.8

py -m pip install scvi==0.6.7

pip install scvi==0.6.7

py -m pip install scvi==0.6.6

pip install scvi==0.6.6

py -m pip install scvi==0.6.5

pip install scvi==0.6.5

py -m pip install scvi==0.6.4

pip install scvi==0.6.4

py -m pip install scvi==0.6.3

pip install scvi==0.6.3

py -m pip install scvi==0.6.2

pip install scvi==0.6.2

py -m pip install scvi==0.6.1

pip install scvi==0.6.1

py -m pip install scvi==0.6.0

pip install scvi==0.6.0

py -m pip install scvi==0.5.0

pip install scvi==0.5.0

py -m pip install scvi==0.4.1

pip install scvi==0.4.1

py -m pip install scvi==0.4.0

pip install scvi==0.4.0

py -m pip install scvi==0.3.0

pip install scvi==0.3.0

py -m pip install scvi==0.2.4

pip install scvi==0.2.4

py -m pip install scvi==0.2.3

pip install scvi==0.2.3

py -m pip install scvi==0.2.2

pip install scvi==0.2.2

py -m pip install scvi==0.2.1

pip install scvi==0.2.1

py -m pip install scvi==0.2.0

pip install scvi==0.2.0

py -m pip install scvi==0.1.6

pip install scvi==0.1.6

py -m pip install scvi==0.1.5

pip install scvi==0.1.5

py -m pip install scvi==0.1.4

pip install scvi==0.1.4

py -m pip install scvi==0.1.3

pip install scvi==0.1.3

py -m pip install scvi==0.1.2

pip install scvi==0.1.2

py -m pip install scvi==0.1.1

pip install scvi==0.1.1

py -m pip install scvi==0.1.0

pip install scvi==0.1.0

Step 4: Otherwise, you can install scvi from local archives:

Download the distribution file from scvi-0.6.8.tar.gz or the specific scvi version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_scvi_downloaded_file>

On Unix/macOs:

pip install <path_to_scvi_downloaded_file>

List distribution:

Project link:

- Homepage