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How to install scvi-tools via python pip

scvi-tools - Deep probabilistic analysis of single-cell omics data., it belongs to Classifiers:

- Development Status :: 4 - Beta
- Intended Audience :: Science/Research
- License :: OSI Approved :: BSD License
- Natural Language :: English
- Operating System :: MacOS
- Operating System :: MacOS :: MacOS X
- Operating System :: Microsoft
- Operating System :: Microsoft :: Windows
- Operating System :: POSIX
- Operating System :: POSIX :: Linux
- Programming Language :: Python :: 3.1
- Programming Language :: Python :: 3.7
- Programming Language :: Python :: 3.8
- Programming Language :: Python :: 3.9
- Programming Language :: Python :: 3.10
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install scvi-tools to support your project or you get trouble as ModuleNotFoundError: No module named "scvi-tools" or ImportError: cannot import name "scvi-tools" in your project, let follow this tutorial to install scvi-tools

Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel

Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_scvi-tools_env

- Active the virtual environment

test_scvi-tools_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_scvi-tools_env

- Active the virtual environment

source test_scvi-tools_env/bin/active

Step 2: OK, now, let flow below content to start the installation scvi-tools

To install scvi-tools on Windows(CMD):

py -m pip install scvi-tools

To install scvi-tools on Unix/macOs:

pip install scvi-tools

Step 3: If you want to install a specific scvi-tools version, add ==<scvi-tools version> to the end command line

Example: 

pip install scvi-tools==0.7.0a0                                                        pre-release

Please see the version list below table:

VersionReleased dateCommand
scvi-tools 0.17.12022-07-15T07:52:37Windows:

py -m pip install scvi-tools==0.17.1

Unix/macOs:

pip install scvi-tools==0.17.1

scvi-tools 0.17.02022-07-14T21:03:13Windows:

py -m pip install scvi-tools==0.17.0

Unix/macOs:

pip install scvi-tools==0.17.0

scvi-tools 0.16.42022-06-14T20:22:09Windows:

py -m pip install scvi-tools==0.16.4

Unix/macOs:

pip install scvi-tools==0.16.4

scvi-tools 0.16.3 yanked2022-06-04T09:04:05Windows:

py -m pip install scvi-tools==0.16.3                                                                          yanked

Unix/macOs:

pip install scvi-tools==0.16.3                                                                          yanked

scvi-tools 0.16.2 yanked2022-05-10T21:44:57Windows:

py -m pip install scvi-tools==0.16.2                                                                          yanked

Unix/macOs:

pip install scvi-tools==0.16.2                                                                          yanked

scvi-tools 0.16.12022-04-22T20:10:55Windows:

py -m pip install scvi-tools==0.16.1

Unix/macOs:

pip install scvi-tools==0.16.1

scvi-tools 0.16.02022-04-12T18:57:47Windows:

py -m pip install scvi-tools==0.16.0

Unix/macOs:

pip install scvi-tools==0.16.0

scvi-tools 0.15.52022-04-07T01:51:59Windows:

py -m pip install scvi-tools==0.15.5

Unix/macOs:

pip install scvi-tools==0.15.5

scvi-tools 0.15.42022-03-28T23:01:38Windows:

py -m pip install scvi-tools==0.15.4

Unix/macOs:

pip install scvi-tools==0.15.4

scvi-tools 0.15.32022-03-25T00:21:06Windows:

py -m pip install scvi-tools==0.15.3

Unix/macOs:

pip install scvi-tools==0.15.3

scvi-tools 0.15.22022-03-15T18:54:37Windows:

py -m pip install scvi-tools==0.15.2

Unix/macOs:

pip install scvi-tools==0.15.2

scvi-tools 0.15.12022-03-11T18:37:45Windows:

py -m pip install scvi-tools==0.15.1

Unix/macOs:

pip install scvi-tools==0.15.1

scvi-tools 0.15.02022-02-28T23:45:42Windows:

py -m pip install scvi-tools==0.15.0

Unix/macOs:

pip install scvi-tools==0.15.0

scvi-tools 0.14.62022-02-06T03:09:19Windows:

py -m pip install scvi-tools==0.14.6

Unix/macOs:

pip install scvi-tools==0.14.6

scvi-tools 0.14.52021-11-23T01:06:38Windows:

py -m pip install scvi-tools==0.14.5

Unix/macOs:

pip install scvi-tools==0.14.5

scvi-tools 0.14.42021-11-17T01:28:35Windows:

py -m pip install scvi-tools==0.14.4

Unix/macOs:

pip install scvi-tools==0.14.4

scvi-tools 0.14.32021-10-22T17:32:39Windows:

py -m pip install scvi-tools==0.14.3

Unix/macOs:

pip install scvi-tools==0.14.3

scvi-tools 0.14.22021-10-18T17:11:45Windows:

py -m pip install scvi-tools==0.14.2

Unix/macOs:

pip install scvi-tools==0.14.2

scvi-tools 0.14.12021-10-12T20:59:42Windows:

py -m pip install scvi-tools==0.14.1

Unix/macOs:

pip install scvi-tools==0.14.1

scvi-tools 0.14.02021-10-07T16:00:56Windows:

py -m pip install scvi-tools==0.14.0

Unix/macOs:

pip install scvi-tools==0.14.0

scvi-tools 0.13.02021-08-23T17:42:16Windows:

py -m pip install scvi-tools==0.13.0

Unix/macOs:

pip install scvi-tools==0.13.0

scvi-tools 0.12.22021-08-11T17:45:34Windows:

py -m pip install scvi-tools==0.12.2

Unix/macOs:

pip install scvi-tools==0.12.2

scvi-tools 0.12.12021-07-29T19:06:10Windows:

py -m pip install scvi-tools==0.12.1

Unix/macOs:

pip install scvi-tools==0.12.1

scvi-tools 0.12.02021-07-15T22:35:23Windows:

py -m pip install scvi-tools==0.12.0

Unix/macOs:

pip install scvi-tools==0.12.0

scvi-tools 0.11.02021-05-24T05:16:58Windows:

py -m pip install scvi-tools==0.11.0

Unix/macOs:

pip install scvi-tools==0.11.0

scvi-tools 0.10.12021-05-04T19:47:31Windows:

py -m pip install scvi-tools==0.10.1

Unix/macOs:

pip install scvi-tools==0.10.1

scvi-tools 0.10.02021-04-20T18:43:59Windows:

py -m pip install scvi-tools==0.10.0

Unix/macOs:

pip install scvi-tools==0.10.0

scvi-tools 0.9.12021-03-20T18:55:36Windows:

py -m pip install scvi-tools==0.9.1

Unix/macOs:

pip install scvi-tools==0.9.1

scvi-tools 0.9.02021-03-04T00:34:06Windows:

py -m pip install scvi-tools==0.9.0

Unix/macOs:

pip install scvi-tools==0.9.0

scvi-tools 0.8.12020-12-24T01:50:00Windows:

py -m pip install scvi-tools==0.8.1

Unix/macOs:

pip install scvi-tools==0.8.1

scvi-tools 0.8.02020-12-17T20:06:59Windows:

py -m pip install scvi-tools==0.8.0

Unix/macOs:

pip install scvi-tools==0.8.0

scvi-tools 0.7.12020-10-20T18:50:51Windows:

py -m pip install scvi-tools==0.7.1

Unix/macOs:

pip install scvi-tools==0.7.1

scvi-tools 0.7.02020-10-14T17:34:17Windows:

py -m pip install scvi-tools==0.7.0

Unix/macOs:

pip install scvi-tools==0.7.0

Step 4: Otherwise, you can install scvi-tools from local archives:

Download the distribution file from scvi-tools-0.17.1.tar.gz or the specific scvi-tools version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_scvi-tools_downloaded_file>

On Unix/macOs:

pip install <path_to_scvi-tools_downloaded_file>

List distribution:

Project link:

- Homepage
- Documentation

 

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