How to install sam2fasta via python pip

- Environment :: Console
- Intended Audience :: Science/Research
- License :: OSI Approved :: ISC License (ISCL)
- Programming Language :: Python :: 3.3
- Programming Language :: Python :: 3.4
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install sam2fasta to support your project or you get trouble as ModuleNotFoundError: No module named "sam2fasta" or ImportError: cannot import name "sam2fasta" in your project, let follow this tutorial to install sam2fasta

Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel

py -m pip install --user virtualenv

py -m venv test_sam2fasta_env

test_sam2fasta_env\Scripts\active

pip3 install virtualenv

python3 -m venv test_sam2fasta_env

source test_sam2fasta_env/bin/active

Step 2: OK, now, let flow below content to start the installation sam2fasta

To install sam2fasta on Windows(CMD):

py -m pip install sam2fasta

To install sam2fasta on Unix/macOs:

pip install sam2fasta

Step 3: If you want to install a specific sam2fasta version, add ==<sam2fasta version> to the end command line

Example:

pip install sam2fasta==0.1.0

Please see the version list below table:

py -m pip install sam2fasta==0.1.0

pip install sam2fasta==0.1.0

Step 4: Otherwise, you can install sam2fasta from local archives:

Download the distribution file from sam2fasta-0.1.0.tar.gz or the specific sam2fasta version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_sam2fasta_downloaded_file>

On Unix/macOs:

pip install <path_to_sam2fasta_downloaded_file>

List distribution:

Project link:

- Homepage