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How to install RNFtools via python pip




RNFtools - RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data., it belongs to Classifiers:

- Operating System :: Unix
- Programming Language :: Python :: 3 :: Only
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install RNFtools to support your project or you get trouble as ModuleNotFoundError: No module named "RNFtools" or ImportError: cannot import name "RNFtools" in your project, let follow this tutorial to install RNFtools



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_RNFtools_env

- Active the virtual environment

test_RNFtools_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_RNFtools_env

- Active the virtual environment

source test_RNFtools_env/bin/active


Step 2: OK, now, let flow below content to start the installation RNFtools

To install RNFtools on Windows(CMD):

py -m pip install RNFtools

To install RNFtools on Unix/macOs:

pip install RNFtools


Step 3: If you want to install a specific RNFtools version, add ==<RNFtools version> to the end command line

Example:

pip install RNFtools==0.1.0


Please see the version list below table:

VersionReleased dateCommand
RNFtools 0.3.1.32018-10-17T23:52:33Windows:

py -m pip install RNFtools==0.3.1.3

Unix/macOs:

pip install RNFtools==0.3.1.3

RNFtools 0.3.1.12017-06-21T17:22:32Windows:

py -m pip install RNFtools==0.3.1.1

Unix/macOs:

pip install RNFtools==0.3.1.1

RNFtools 0.3.1.02017-06-21T03:05:44Windows:

py -m pip install RNFtools==0.3.1.0

Unix/macOs:

pip install RNFtools==0.3.1.0

RNFtools 0.3.0.22017-04-18T13:20:57Windows:

py -m pip install RNFtools==0.3.0.2

Unix/macOs:

pip install RNFtools==0.3.0.2

RNFtools 0.3.0.12017-04-18T13:09:16Windows:

py -m pip install RNFtools==0.3.0.1

Unix/macOs:

pip install RNFtools==0.3.0.1

RNFtools 0.3.02017-04-17T23:42:17Windows:

py -m pip install RNFtools==0.3.0

Unix/macOs:

pip install RNFtools==0.3.0

RNFtools 0.2.72016-01-07T13:44:30Windows:

py -m pip install RNFtools==0.2.7

Unix/macOs:

pip install RNFtools==0.2.7

RNFtools 0.2.62015-12-01T20:21:26Windows:

py -m pip install RNFtools==0.2.6

Unix/macOs:

pip install RNFtools==0.2.6

RNFtools 0.2.52015-11-24T10:48:45Windows:

py -m pip install RNFtools==0.2.5

Unix/macOs:

pip install RNFtools==0.2.5

RNFtools 0.2.42015-11-03T14:51:19Windows:

py -m pip install RNFtools==0.2.4

Unix/macOs:

pip install RNFtools==0.2.4

RNFtools 0.2.22015-10-03T10:55:48Windows:

py -m pip install RNFtools==0.2.2

Unix/macOs:

pip install RNFtools==0.2.2

RNFtools 0.2.12015-09-17T08:21:14Windows:

py -m pip install RNFtools==0.2.1

Unix/macOs:

pip install RNFtools==0.2.1

RNFtools 0.2.02015-10-03T10:57:48Windows:

py -m pip install RNFtools==0.2.0

Unix/macOs:

pip install RNFtools==0.2.0

RNFtools 0.1.0.post512015-04-23T19:55:17Windows:

py -m pip install RNFtools==0.1.0.post51

Unix/macOs:

pip install RNFtools==0.1.0.post51

RNFtools 0.1.0.post492015-04-21T16:22:38Windows:

py -m pip install RNFtools==0.1.0.post49

Unix/macOs:

pip install RNFtools==0.1.0.post49

RNFtools 0.1.0.post182015-03-31T14:32:01Windows:

py -m pip install RNFtools==0.1.0.post18

Unix/macOs:

pip install RNFtools==0.1.0.post18

RNFtools 0.1.02015-03-19T11:46:26Windows:

py -m pip install RNFtools==0.1.0

Unix/macOs:

pip install RNFtools==0.1.0


Step 4: Otherwise, you can install RNFtools from local archives:

Download the distribution file from RNFtools-0.3.1.3.tar.gz or the specific RNFtools version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_RNFtools_downloaded_file>

On Unix/macOs:

pip install <path_to_RNFtools_downloaded_file>


List distribution:


Project link:

- Homepage