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How to install rna-count-salmon via python pip




rna-count-salmon - rna-count-salmon is a pipeline written with Snakemake that quantifies your RNA-Seq reads with Salmon, controls input quality with FastQC, and gathers qualities with MultiQC., it belongs to Classifiers:

- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install rna-count-salmon to support your project or you get trouble as ModuleNotFoundError: No module named "rna-count-salmon" or ImportError: cannot import name "rna-count-salmon" in your project, let follow this tutorial to install rna-count-salmon



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_rna-count-salmon_env

- Active the virtual environment

test_rna-count-salmon_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_rna-count-salmon_env

- Active the virtual environment

source test_rna-count-salmon_env/bin/active


Step 2: OK, now, let flow below content to start the installation rna-count-salmon

To install rna-count-salmon on Windows(CMD):

py -m pip install rna-count-salmon

To install rna-count-salmon on Unix/macOs:

pip install rna-count-salmon


Step 3: If you want to install a specific rna-count-salmon version, add ==<rna-count-salmon version> to the end command line

Example:

pip install rna-count-salmon==1.9


Please see the version list below table:

VersionReleased dateCommand
rna-count-salmon 1.92020-08-18T13:03:11Windows:

py -m pip install rna-count-salmon==1.9

Unix/macOs:

pip install rna-count-salmon==1.9


Step 4: Otherwise, you can install rna-count-salmon from local archives:

Download the distribution file from rna-count-salmon-1.9.tar.gz or the specific rna-count-salmon version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_rna-count-salmon_downloaded_file>

On Unix/macOs:

pip install <path_to_rna-count-salmon_downloaded_file>


List distribution:


Project link:

- Homepage