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How to install rmseq via python pip




rmseq - RM-seq is a bioinformatics tool for for assessing resistance mutations from PE short-reads., it belongs to Classifiers:

- Topic :: Scientific/Engineering :: Bio-Informatics
- Topic :: Scientific/Engineering :: Medical Science Apps.

When you know about this project and you want to new install rmseq to support your project or you get trouble as ModuleNotFoundError: No module named "rmseq" or ImportError: cannot import name "rmseq" in your project, let follow this tutorial to install rmseq



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_rmseq_env

- Active the virtual environment

test_rmseq_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_rmseq_env

- Active the virtual environment

source test_rmseq_env/bin/active


Step 2: OK, now, let flow below content to start the installation rmseq

To install rmseq on Windows(CMD):

py -m pip install rmseq

To install rmseq on Unix/macOs:

pip install rmseq


Step 3: If you want to install a specific rmseq version, add ==<rmseq version> to the end command line

Example:

pip install rmseq==0.0.1b0                                                        pre-release


Please see the version list below table:

VersionReleased dateCommand
rmseq 0.0.572019-01-16T06:06:36Windows:

py -m pip install rmseq==0.0.57

Unix/macOs:

pip install rmseq==0.0.57

rmseq 0.0.562018-09-18T12:18:18Windows:

py -m pip install rmseq==0.0.56

Unix/macOs:

pip install rmseq==0.0.56


Step 4: Otherwise, you can install rmseq from local archives:

Download the distribution file from rmseq-0.0.57.tar.gz or the specific rmseq version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_rmseq_downloaded_file>

On Unix/macOs:

pip install <path_to_rmseq_downloaded_file>


List distribution:


Project link:

- Download