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How to install poretools via python pip




poretools - A toolset for working with nanopore sequencing data, it belongs to Classifiers:

- License :: OSI Approved :: GNU General Public License (GPL)
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install poretools to support your project or you get trouble as ModuleNotFoundError: No module named "poretools" or ImportError: cannot import name "poretools" in your project, let follow this tutorial to install poretools



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_poretools_env

- Active the virtual environment

test_poretools_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_poretools_env

- Active the virtual environment

source test_poretools_env/bin/active


Step 2: OK, now, let flow below content to start the installation poretools

To install poretools on Windows(CMD):

py -m pip install poretools

To install poretools on Unix/macOs:

pip install poretools


Step 3: If you want to install a specific poretools version, add ==<poretools version> to the end command line

Example:

pip install poretools==0.4.0


Please see the version list below table:

VersionReleased dateCommand
poretools 0.6.02016-08-30T03:47:33Windows:

py -m pip install poretools==0.6.0

Unix/macOs:

pip install poretools==0.6.0

poretools 0.5.12016-03-25T18:53:29Windows:

py -m pip install poretools==0.5.1

Unix/macOs:

pip install poretools==0.5.1

poretools 0.5.02014-10-16T13:08:08Windows:

py -m pip install poretools==0.5.0

Unix/macOs:

pip install poretools==0.5.0

poretools 0.4.02014-10-03T13:02:21Windows:

py -m pip install poretools==0.4.0

Unix/macOs:

pip install poretools==0.4.0


Step 4: Otherwise, you can install poretools from local archives:

Download the distribution file from poretools-0.6.0.tar.gz or the specific poretools version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_poretools_downloaded_file>

On Unix/macOs:

pip install <path_to_poretools_downloaded_file>


List distribution:


Project link:

- Homepage