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How to install megalodon via python pip




megalodon - Nanopore base calling augmentation., it belongs to Classifiers:

- Development Status :: 4 - Beta
- Environment :: Console
- Environment :: GPU
- Intended Audience :: Science/Research
- License :: OSI Approved :: Mozilla Public License 2.0 (MPL 2.0)
- Natural Language :: English
- Operating System :: Unix
- Programming Language :: Python :: 3 :: Only
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Artificial Intelligence
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install megalodon to support your project or you get trouble as ModuleNotFoundError: No module named "megalodon" or ImportError: cannot import name "megalodon" in your project, let follow this tutorial to install megalodon



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_megalodon_env

- Active the virtual environment

test_megalodon_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_megalodon_env

- Active the virtual environment

source test_megalodon_env/bin/active


Step 2: OK, now, let flow below content to start the installation megalodon

To install megalodon on Windows(CMD):

py -m pip install megalodon

To install megalodon on Unix/macOs:

pip install megalodon


Step 3: If you want to install a specific megalodon version, add ==<megalodon version> to the end command line

Example:

pip install megalodon==1.0.0


Please see the version list below table:

VersionReleased dateCommand
megalodon 2.5.02022-03-25T01:19:13Windows:

py -m pip install megalodon==2.5.0

Unix/macOs:

pip install megalodon==2.5.0

megalodon 2.4.22022-01-26T23:24:08Windows:

py -m pip install megalodon==2.4.2

Unix/macOs:

pip install megalodon==2.4.2

megalodon 2.4.12021-12-14T21:39:35Windows:

py -m pip install megalodon==2.4.1

Unix/macOs:

pip install megalodon==2.4.1

megalodon 2.4.02021-12-01T04:06:39Windows:

py -m pip install megalodon==2.4.0

Unix/macOs:

pip install megalodon==2.4.0

megalodon 2.3.52021-10-26T21:36:44Windows:

py -m pip install megalodon==2.3.5

Unix/macOs:

pip install megalodon==2.3.5

megalodon 2.3.42021-07-19T14:23:39Windows:

py -m pip install megalodon==2.3.4

Unix/macOs:

pip install megalodon==2.3.4

megalodon 2.3.32021-05-27T18:30:02Windows:

py -m pip install megalodon==2.3.3

Unix/macOs:

pip install megalodon==2.3.3

megalodon 2.3.22021-05-26T22:53:37Windows:

py -m pip install megalodon==2.3.2

Unix/macOs:

pip install megalodon==2.3.2

megalodon 2.3.12021-04-05T16:08:09Windows:

py -m pip install megalodon==2.3.1

Unix/macOs:

pip install megalodon==2.3.1

megalodon 2.3.02021-04-01T23:02:44Windows:

py -m pip install megalodon==2.3.0

Unix/macOs:

pip install megalodon==2.3.0

megalodon 2.2.102021-02-02T00:30:36Windows:

py -m pip install megalodon==2.2.10

Unix/macOs:

pip install megalodon==2.2.10

megalodon 2.2.92020-12-02T00:41:24Windows:

py -m pip install megalodon==2.2.9

Unix/macOs:

pip install megalodon==2.2.9

megalodon 2.2.82020-11-26T23:15:32Windows:

py -m pip install megalodon==2.2.8

Unix/macOs:

pip install megalodon==2.2.8

megalodon 2.2.72020-11-25T06:37:30Windows:

py -m pip install megalodon==2.2.7

Unix/macOs:

pip install megalodon==2.2.7

megalodon 2.2.62020-11-17T23:16:11Windows:

py -m pip install megalodon==2.2.6

Unix/macOs:

pip install megalodon==2.2.6

megalodon 2.2.52020-11-09T20:15:04Windows:

py -m pip install megalodon==2.2.5

Unix/macOs:

pip install megalodon==2.2.5

megalodon 2.2.42020-10-20T18:39:14Windows:

py -m pip install megalodon==2.2.4

Unix/macOs:

pip install megalodon==2.2.4

megalodon 2.2.32020-09-30T21:58:21Windows:

py -m pip install megalodon==2.2.3

Unix/macOs:

pip install megalodon==2.2.3

megalodon 2.2.22020-09-18T16:07:43Windows:

py -m pip install megalodon==2.2.2

Unix/macOs:

pip install megalodon==2.2.2

megalodon 2.2.12020-09-08T18:55:24Windows:

py -m pip install megalodon==2.2.1

Unix/macOs:

pip install megalodon==2.2.1

megalodon 2.2.02020-08-20T21:53:15Windows:

py -m pip install megalodon==2.2.0

Unix/macOs:

pip install megalodon==2.2.0

megalodon 2.1.02020-06-17T23:18:12Windows:

py -m pip install megalodon==2.1.0

Unix/macOs:

pip install megalodon==2.1.0

megalodon 2.0.02020-03-19T21:21:40Windows:

py -m pip install megalodon==2.0.0

Unix/macOs:

pip install megalodon==2.0.0

megalodon 1.0.02020-02-25T16:55:11Windows:

py -m pip install megalodon==1.0.0

Unix/macOs:

pip install megalodon==1.0.0


Step 4: Otherwise, you can install megalodon from local archives:

Download the distribution file from megalodon-2.5.0.tar.gz or the specific megalodon version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_megalodon_downloaded_file>

On Unix/macOs:

pip install <path_to_megalodon_downloaded_file>


List distribution:

- megalodon-1.0.0-cp37-cp37m-macosx_10_14_x86_64.whl
- megalodon-1.0.0.tar.gz
- megalodon-2.0.0-cp36-cp36m-macosx_10_9_x86_64.whl
- megalodon-2.0.0.tar.gz
- megalodon-2.1.0-cp36-cp36m-macosx_10_9_x86_64.whl
- megalodon-2.1.0.tar.gz
- megalodon-2.2.0-cp36-cp36m-macosx_10_9_x86_64.whl
- megalodon-2.2.0.tar.gz
- megalodon-2.2.1-cp36-cp36m-macosx_10_9_x86_64.whl
- megalodon-2.2.1.tar.gz
- megalodon-2.2.2-cp36-cp36m-macosx_10_9_x86_64.whl
- megalodon-2.2.2.tar.gz
- megalodon-2.2.3-cp36-cp36m-macosx_10_9_x86_64.whl
- megalodon-2.2.3.tar.gz
- megalodon-2.2.4-cp36-cp36m-macosx_10_9_x86_64.whl
- megalodon-2.2.4.tar.gz
- megalodon-2.2.5-cp36-cp36m-macosx_10_9_x86_64.whl
- megalodon-2.2.5.tar.gz
- megalodon-2.2.6-cp36-cp36m-macosx_10_9_x86_64.whl
- megalodon-2.2.6.tar.gz
- megalodon-2.2.7-cp36-cp36m-macosx_10_9_x86_64.whl
- megalodon-2.2.7.tar.gz
- megalodon-2.2.8-cp36-cp36m-macosx_10_9_x86_64.whl
- megalodon-2.2.8.tar.gz
- megalodon-2.2.9-cp36-cp36m-macosx_10_9_x86_64.whl
- megalodon-2.2.9.tar.gz
- megalodon-2.2.10-cp37-cp37m-macosx_10_15_x86_64.whl
- megalodon-2.2.10.tar.gz
- megalodon-2.3.0-cp37-cp37m-macosx_10_15_x86_64.whl
- megalodon-2.3.0.tar.gz
- megalodon-2.3.1-cp37-cp37m-macosx_10_15_x86_64.whl
- megalodon-2.3.1.tar.gz
- megalodon-2.3.2-cp37-cp37m-macosx_10_15_x86_64.whl
- megalodon-2.3.2.tar.gz
- megalodon-2.3.3-cp37-cp37m-macosx_10_15_x86_64.whl
- megalodon-2.3.3.tar.gz
- megalodon-2.3.4-cp37-cp37m-macosx_10_15_x86_64.whl (python version >=3.6)
- megalodon-2.3.4.tar.gz (python version >=3.6)
- megalodon-2.3.5-cp37-cp37m-macosx_10_15_x86_64.whl (python version >=3.6)
- megalodon-2.3.5.tar.gz (python version >=3.6)
- megalodon-2.4.0-cp37-cp37m-macosx_10_15_x86_64.whl (python version >=3.6)
- megalodon-2.4.0.tar.gz (python version >=3.6)
- megalodon-2.4.1-cp37-cp37m-macosx_10_15_x86_64.whl (python version >=3.6)
- megalodon-2.4.1.tar.gz (python version >=3.6)
- megalodon-2.4.2-cp37-cp37m-macosx_10_15_x86_64.whl (python version >=3.6)
- megalodon-2.4.2.tar.gz (python version >=3.6)
- megalodon-2.5.0-cp37-cp37m-macosx_10_15_x86_64.whl (python version >=3.6)
- megalodon-2.5.0.tar.gz (python version >=3.6)


Project link:

- Homepage