How to install humann2 via python pip

- Development Status :: 5 - Production/Stable
- Environment :: Console
- Operating System :: MacOS
- Operating System :: Unix
- Programming Language :: Python :: 2
- Programming Language :: Python :: 2.7
- Programming Language :: Python :: 3.4
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install humann2 to support your project or you get trouble as ModuleNotFoundError: No module named "humann2" or ImportError: cannot import name "humann2" in your project, let follow this tutorial to install humann2

Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel

py -m pip install --user virtualenv

py -m venv test_humann2_env

test_humann2_env\Scripts\active

pip3 install virtualenv

python3 -m venv test_humann2_env

source test_humann2_env/bin/active

Step 2: OK, now, let flow below content to start the installation humann2

To install humann2 on Windows(CMD):

py -m pip install humann2

To install humann2 on Unix/macOs:

pip install humann2

Step 3: If you want to install a specific humann2 version, add ==<humann2 version> to the end command line

Example:

pip install humann2==0.6.1

Please see the version list below table:

py -m pip install humann2==2.8.2

pip install humann2==2.8.2

py -m pip install humann2==2.8.1

pip install humann2==2.8.1

py -m pip install humann2==2.8.0

pip install humann2==2.8.0

py -m pip install humann2==0.11.2

pip install humann2==0.11.2

py -m pip install humann2==0.11.1

pip install humann2==0.11.1

py -m pip install humann2==0.11.0

pip install humann2==0.11.0

py -m pip install humann2==0.10.0

pip install humann2==0.10.0

py -m pip install humann2==0.9.10

pip install humann2==0.9.10

py -m pip install humann2==0.9.9

pip install humann2==0.9.9

py -m pip install humann2==0.9.8

pip install humann2==0.9.8

py -m pip install humann2==0.9.7

pip install humann2==0.9.7

py -m pip install humann2==0.9.6

pip install humann2==0.9.6

py -m pip install humann2==0.9.5

pip install humann2==0.9.5

py -m pip install humann2==0.9.4

pip install humann2==0.9.4

py -m pip install humann2==0.9.3

pip install humann2==0.9.3

py -m pip install humann2==0.9.2

pip install humann2==0.9.2

py -m pip install humann2==0.9.1

pip install humann2==0.9.1

py -m pip install humann2==0.9.0

pip install humann2==0.9.0

py -m pip install humann2==0.8.2

pip install humann2==0.8.2

py -m pip install humann2==0.8.1

pip install humann2==0.8.1

py -m pip install humann2==0.8.0

pip install humann2==0.8.0

py -m pip install humann2==0.7.1

pip install humann2==0.7.1

py -m pip install humann2==0.7.0

pip install humann2==0.7.0

py -m pip install humann2==0.6.2

pip install humann2==0.6.2

py -m pip install humann2==0.6.1

pip install humann2==0.6.1

Step 4: Otherwise, you can install humann2 from local archives:

Download the distribution file from humann2-2.8.2.tar.gz or the specific humann2 version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_humann2_downloaded_file>

On Unix/macOs:

pip install <path_to_humann2_downloaded_file>

List distribution:

- humann2-0.6.1.tar.gz
- humann2-0.6.2.tar.gz
- humann2-0.7.0.tar.gz
- humann2-0.7.1.tar.gz
- humann2-0.8.0.tar.gz
- humann2-0.8.1.tar.gz
- humann2-0.8.2.tar.gz
- humann2-0.9.0.tar.gz
- humann2-0.9.1.tar.gz
- humann2-0.9.2.tar.gz
- humann2-0.9.3.tar.gz
- humann2-0.9.4.tar.gz
- humann2-0.9.5.tar.gz
- humann2-0.9.6.tar.gz
- humann2-0.9.7.tar.gz
- humann2-0.9.8.tar.gz
- humann2-0.9.9.tar.gz
- humann2-0.9.10.tar.gz
- humann2-0.10.0.tar.gz
- humann2-0.11.0.tar.gz
- humann2-0.11.1.tar.gz
- humann2-0.11.2.tar.gz
- humann2-2.8.0.tar.gz
- humann2-2.8.1.tar.gz
- humann2-2.8.2.tar.gz

Project link:

- Homepage