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How to install gtdbtk via python pip

gtdbtk - A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes., it belongs to Classifiers:

- Development Status :: 5 - Production/Stable
- Intended Audience :: Science/Research
- License :: OSI Approved :: GNU General Public License v3 (GPLv3)
- Natural Language :: English
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install gtdbtk to support your project or you get trouble as ModuleNotFoundError: No module named "gtdbtk" or ImportError: cannot import name "gtdbtk" in your project, let follow this tutorial to install gtdbtk

Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel

Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_gtdbtk_env

- Active the virtual environment

test_gtdbtk_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_gtdbtk_env

- Active the virtual environment

source test_gtdbtk_env/bin/active

Step 2: OK, now, let flow below content to start the installation gtdbtk

To install gtdbtk on Windows(CMD):

py -m pip install gtdbtk

To install gtdbtk on Unix/macOs:

pip install gtdbtk

Step 3: If you want to install a specific gtdbtk version, add ==<gtdbtk version> to the end command line

Example: 

pip install gtdbtk==0.0.1

Please see the version list below table:

VersionReleased dateCommand
gtdbtk 2.1.12022-07-11T05:11:58Windows:

py -m pip install gtdbtk==2.1.1

Unix/macOs:

pip install gtdbtk==2.1.1

gtdbtk 2.1.02022-05-12T03:23:56Windows:

py -m pip install gtdbtk==2.1.0

Unix/macOs:

pip install gtdbtk==2.1.0

gtdbtk 2.0.02022-04-08T01:55:04Windows:

py -m pip install gtdbtk==2.0.0

Unix/macOs:

pip install gtdbtk==2.0.0

gtdbtk 1.7.02021-10-15T03:17:55Windows:

py -m pip install gtdbtk==1.7.0

Unix/macOs:

pip install gtdbtk==1.7.0

gtdbtk 1.6.02021-08-20T00:20:38Windows:

py -m pip install gtdbtk==1.6.0

Unix/macOs:

pip install gtdbtk==1.6.0

gtdbtk 1.5.12021-06-24T06:25:13Windows:

py -m pip install gtdbtk==1.5.1

Unix/macOs:

pip install gtdbtk==1.5.1

gtdbtk 1.5.02021-04-26T21:54:41Windows:

py -m pip install gtdbtk==1.5.0

Unix/macOs:

pip install gtdbtk==1.5.0

gtdbtk 1.4.12021-02-03T23:57:32Windows:

py -m pip install gtdbtk==1.4.1

Unix/macOs:

pip install gtdbtk==1.4.1

gtdbtk 1.4.02020-11-30T23:01:46Windows:

py -m pip install gtdbtk==1.4.0

Unix/macOs:

pip install gtdbtk==1.4.0

gtdbtk 1.3.02020-07-18T07:24:18Windows:

py -m pip install gtdbtk==1.3.0

Unix/macOs:

pip install gtdbtk==1.3.0

gtdbtk 1.2.02020-05-29T05:42:54Windows:

py -m pip install gtdbtk==1.2.0

Unix/macOs:

pip install gtdbtk==1.2.0

gtdbtk 1.1.12020-04-22T07:32:40Windows:

py -m pip install gtdbtk==1.1.1

Unix/macOs:

pip install gtdbtk==1.1.1

gtdbtk 1.1.02020-04-14T04:58:28Windows:

py -m pip install gtdbtk==1.1.0

Unix/macOs:

pip install gtdbtk==1.1.0

gtdbtk 1.0.22019-12-12T05:10:56Windows:

py -m pip install gtdbtk==1.0.2

Unix/macOs:

pip install gtdbtk==1.0.2

gtdbtk 1.0.12019-12-05T10:49:07Windows:

py -m pip install gtdbtk==1.0.1

Unix/macOs:

pip install gtdbtk==1.0.1

gtdbtk 1.0.02019-12-05T05:27:52Windows:

py -m pip install gtdbtk==1.0.0

Unix/macOs:

pip install gtdbtk==1.0.0

gtdbtk 0.3.32019-11-15T05:51:36Windows:

py -m pip install gtdbtk==0.3.3

Unix/macOs:

pip install gtdbtk==0.3.3

gtdbtk 0.3.22019-07-12T07:48:34Windows:

py -m pip install gtdbtk==0.3.2

Unix/macOs:

pip install gtdbtk==0.3.2

gtdbtk 0.3.12019-07-08T02:38:05Windows:

py -m pip install gtdbtk==0.3.1

Unix/macOs:

pip install gtdbtk==0.3.1

gtdbtk 0.3.02019-06-21T00:37:51Windows:

py -m pip install gtdbtk==0.3.0

Unix/macOs:

pip install gtdbtk==0.3.0

gtdbtk 0.2.22019-03-18T01:52:34Windows:

py -m pip install gtdbtk==0.2.2

Unix/macOs:

pip install gtdbtk==0.2.2

gtdbtk 0.2.12019-03-08T02:08:03Windows:

py -m pip install gtdbtk==0.2.1

Unix/macOs:

pip install gtdbtk==0.2.1

gtdbtk 0.1.62019-01-14T01:38:14Windows:

py -m pip install gtdbtk==0.1.6

Unix/macOs:

pip install gtdbtk==0.1.6

gtdbtk 0.1.32018-09-21T02:58:43Windows:

py -m pip install gtdbtk==0.1.3

Unix/macOs:

pip install gtdbtk==0.1.3

gtdbtk 0.1.22018-09-18T04:28:56Windows:

py -m pip install gtdbtk==0.1.2

Unix/macOs:

pip install gtdbtk==0.1.2

gtdbtk 0.1.12018-08-30T22:29:36Windows:

py -m pip install gtdbtk==0.1.1

Unix/macOs:

pip install gtdbtk==0.1.1

gtdbtk 0.1.02018-08-30T06:38:40Windows:

py -m pip install gtdbtk==0.1.0

Unix/macOs:

pip install gtdbtk==0.1.0

gtdbtk 0.0.72018-04-19T01:02:27Windows:

py -m pip install gtdbtk==0.0.7

Unix/macOs:

pip install gtdbtk==0.0.7

gtdbtk 0.0.62018-04-19T00:51:46Windows:

py -m pip install gtdbtk==0.0.6

Unix/macOs:

pip install gtdbtk==0.0.6

gtdbtk 0.0.52018-03-16T03:16:25Windows:

py -m pip install gtdbtk==0.0.5

Unix/macOs:

pip install gtdbtk==0.0.5

gtdbtk 0.0.32018-02-27T10:44:38Windows:

py -m pip install gtdbtk==0.0.3

Unix/macOs:

pip install gtdbtk==0.0.3

gtdbtk 0.0.22018-02-27T01:11:20Windows:

py -m pip install gtdbtk==0.0.2

Unix/macOs:

pip install gtdbtk==0.0.2

gtdbtk 0.0.12017-08-22T20:44:25Windows:

py -m pip install gtdbtk==0.0.1

Unix/macOs:

pip install gtdbtk==0.0.1

Step 4: Otherwise, you can install gtdbtk from local archives:

Download the distribution file from gtdbtk-2.1.1.tar.gz or the specific gtdbtk version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_gtdbtk_downloaded_file>

On Unix/macOs:

pip install <path_to_gtdbtk_downloaded_file>

List distribution:

- gtdbtk-0.0.1.tar.gz
- gtdbtk-0.0.2.tar.gz
- gtdbtk-0.0.3.tar.gz
- gtdbtk-0.0.4b0.tar.gz
- gtdbtk-0.0.4b1.tar.gz
- gtdbtk-0.0.4b2.tar.gz
- gtdbtk-0.0.4b3.tar.gz
- gtdbtk-0.0.5.tar.gz
- gtdbtk-0.0.6.tar.gz
- gtdbtk-0.0.7.tar.gz
- gtdbtk-0.0.8b1.tar.gz
- gtdbtk-0.1.0.tar.gz
- gtdbtk-0.1.1.tar.gz
- gtdbtk-0.1.2.tar.gz
- gtdbtk-0.1.3.tar.gz
- gtdbtk-0.1.6.tar.gz
- gtdbtk-0.2.1.tar.gz
- gtdbtk-0.2.2.tar.gz
- gtdbtk-0.3.0.tar.gz
- gtdbtk-0.3.1.tar.gz
- gtdbtk-0.3.2.tar.gz
- gtdbtk-0.3.3.tar.gz
- gtdbtk-1.0.0.tar.gz (python version >=3.6)
- gtdbtk-1.0.1.tar.gz (python version >=3.6)
- gtdbtk-1.0.2.tar.gz (python version >=3.6)
- gtdbtk-1.1.0.tar.gz (python version >=3.6)
- gtdbtk-1.1.1.tar.gz (python version >=3.6)
- gtdbtk-1.2.0-py3-none-any.whl (python version >=3.6)
- gtdbtk-1.2.0.tar.gz (python version >=3.6)
- gtdbtk-1.3.0-py3-none-any.whl (python version >=3.6)
- gtdbtk-1.3.0.tar.gz (python version >=3.6)
- gtdbtk-1.4.0-py3-none-any.whl (python version >=3.6)
- gtdbtk-1.4.0.tar.gz (python version >=3.6)
- gtdbtk-1.4.1-py3-none-any.whl (python version >=3.6)
- gtdbtk-1.4.1.tar.gz (python version >=3.6)
- gtdbtk-1.5.0-py3-none-any.whl (python version >=3.6)
- gtdbtk-1.5.0.tar.gz (python version >=3.6)
- gtdbtk-1.5.1-py3-none-any.whl (python version >=3.6)
- gtdbtk-1.5.1.tar.gz (python version >=3.6)
- gtdbtk-1.6.0-py3-none-any.whl (python version >=3.6)
- gtdbtk-1.6.0.tar.gz (python version >=3.6)
- gtdbtk-1.7.0-py3-none-any.whl (python version >=3.6)
- gtdbtk-1.7.0.tar.gz (python version >=3.6)
- gtdbtk-2.0.0-py3-none-any.whl (python version >=3.6)
- gtdbtk-2.0.0.tar.gz (python version >=3.6)
- gtdbtk-2.1.0-py3-none-any.whl (python version >=3.6)
- gtdbtk-2.1.0.tar.gz (python version >=3.6)
- gtdbtk-2.1.1-py3-none-any.whl (python version >=3.6)
- gtdbtk-2.1.1.tar.gz (python version >=3.6)

Project link:

- Homepage

 

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