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How to install eQTLseq via python pip




eQTLseq - Hierarchical probabilistic models for multiple gene/variant associations based on NGS data, it belongs to Classifiers:

- Environment :: Console
- Intended Audience :: Science/Research
- Operating System :: Unix
- Topic :: Scientific/Engineering
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install eQTLseq to support your project or you get trouble as ModuleNotFoundError: No module named "eQTLseq" or ImportError: cannot import name "eQTLseq" in your project, let follow this tutorial to install eQTLseq



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_eQTLseq_env

- Active the virtual environment

test_eQTLseq_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_eQTLseq_env

- Active the virtual environment

source test_eQTLseq_env/bin/active


Step 2: OK, now, let flow below content to start the installation eQTLseq

To install eQTLseq on Windows(CMD):

py -m pip install eQTLseq

To install eQTLseq on Unix/macOs:

pip install eQTLseq


Step 3: If you want to install a specific eQTLseq version, add ==<eQTLseq version> to the end command line

Example:

pip install eQTLseq==17.2.10


Please see the version list below table:

VersionReleased dateCommand
eQTLseq 17.5.282017-05-28T15:25:23Windows:

py -m pip install eQTLseq==17.5.28

Unix/macOs:

pip install eQTLseq==17.5.28

eQTLseq 17.2.102017-02-10T13:06:46Windows:

py -m pip install eQTLseq==17.2.10

Unix/macOs:

pip install eQTLseq==17.2.10


Step 4: Otherwise, you can install eQTLseq from local archives:

Download the distribution file from eQTLseq-17.5.28.tar.gz or the specific eQTLseq version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_eQTLseq_downloaded_file>

On Unix/macOs:

pip install <path_to_eQTLseq_downloaded_file>


List distribution:

- eQTLseq-17.2.10.tar.gz
- eQTLseq-17.5.28.tar.gz


Project link:

- Homepage