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How to install breakSeqInNs-then-translate via python pip




breakSeqInNs-then-translate - To filter the sequences by translating the protein coding genes (PCGs) with proper genetic code table, if one of the PCGs has interal stop codon, filter out this sequence. See https://github.com/linzhi2013/breakSeqInNs_then_translate, it belongs to Classifiers:

- License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
- Operating System :: MacOS
- Operating System :: MacOS :: MacOS X
- Operating System :: Microsoft :: Windows
- Operating System :: POSIX :: Linux
- Topic :: Scientific/Engineering :: Bio-Informatics

When you know about this project and you want to new install breakSeqInNs-then-translate to support your project or you get trouble as ModuleNotFoundError: No module named "breakSeqInNs-then-translate" or ImportError: cannot import name "breakSeqInNs-then-translate" in your project, let follow this tutorial to install breakSeqInNs-then-translate



Installation:

Step 1: First, ensure you installed pip in your os, to check pip has been installed on your computer

In Windows (CMD):

py -m pip --version

In Unix/macOS:

python3 -m pip --version

Ensure pip, setuptools, and wheel are up to date:

In Windows (CMD):

py -m pip install --upgrade pip setuptools wheel

In Unix/macOS:

python3 -m pip install --upgrade pip setuptools wheel


Optional - If you want to install in virtual environment:

In Windows (CMD):

- Install virtualenv - if you installed it, please ignore

py -m pip install --user virtualenv

- Create a virtual environment

py -m venv test_breakSeqInNs-then-translate_env

- Active the virtual environment

test_breakSeqInNs-then-translate_env\Scripts\active

In Unix/macOS:

- Install virtualenv - if you installed it, please ignore

pip3 install virtualenv

- Create a virtual environment

python3 -m venv test_breakSeqInNs-then-translate_env

- Active the virtual environment

source test_breakSeqInNs-then-translate_env/bin/active


Step 2: OK, now, let flow below content to start the installation breakSeqInNs-then-translate

To install breakSeqInNs-then-translate on Windows(CMD):

py -m pip install breakSeqInNs-then-translate

To install breakSeqInNs-then-translate on Unix/macOs:

pip install breakSeqInNs-then-translate


Step 3: If you want to install a specific breakSeqInNs-then-translate version, add ==<breakSeqInNs-then-translate version> to the end command line

Example:

pip install breakSeqInNs-then-translate==0.0.1


Please see the version list below table:

VersionReleased dateCommand
breakSeqInNs-then-translate 0.0.12018-08-03T06:24:17Windows:

py -m pip install breakSeqInNs-then-translate==0.0.1

Unix/macOs:

pip install breakSeqInNs-then-translate==0.0.1


Step 4: Otherwise, you can install breakSeqInNs-then-translate from local archives:

Download the distribution file from breakSeqInNs_then_translate-0.0.1.tar.gz or the specific breakSeqInNs-then-translate version in the below list of distribution

After that, install by command:

On Windows(CMD):

py -m pip install <path_to_breakSeqInNs-then-translate_downloaded_file>

On Unix/macOs:

pip install <path_to_breakSeqInNs-then-translate_downloaded_file>


List distribution:

- breakSeqInNs_then_translate-0.0.1.tar.gz (python version >=3)


Project link:

- Homepage