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Which is the slowest alignment for mafft alignment?


Asked by Kaysen Ray on Nov 28, 2021 FAQ



E-INS-i (Very slow; recommended for <200 sequences with multiple conserved domains and long gaps) Help Updated (2015/Jun) L-INS-i (Very slow; recommended for <200 sequences with one conserved domain and long gaps) Help
Next,
MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc. Mac OS X.
Thereof, Multiple Alignment of DNA Sequences with MAFFT. In Bioinformatics for DNA Sequence Analysis edited by D. Posada Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework. Recent developments in the MAFFT multiple sequence alignment program.
Just so,
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 2002 Jul; 30 :3059-3066.
Additionally,
About MAFFT is a multiple sequence alignment program for unix-like operating systems. It offers a range of multiple alignment methods, L-INS-i (accurate; for alignment of <∼200 sequences), FFT-NS-2 (fast; for alignment of <∼30,000 sequences), etc.