What kind of database is the uniprot database?

The UniProt databases build upon these solid foundations. The UniProt databases consist of three database layers: The UniProt Archive (UniParc) provides a stable, comprehensive sequence collection without redundant sequences by storing the complete body of publicly available protein sequence data.
In fact, what do you need to know about the UniProt database?
UniProt Knowledgebase (UniProtKB) is the central access point for extensive curated protein information, including function, classification, and cross- reference. The database is divided into two section UniProtKB/Swiss-Prot which is manually curated and UniProtKB/TrEMBL which is automatically maintained.
Consequently, which is the central hub of the UniProt KnowledgeBase? The UniProt Knowledgebase (UniProtKB) is the central hub for the collection of functional information on proteins, with accurate, consistent and rich annotation.
Indeed, what's the purpose of the UniProt protein basket?
When browsing through different UniProt proteins, you can use the 'basket' to save them, so that you can back to find or analyse them later. More... The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information.
In respect to this, what is the mission of the UniProt project?
The mission of UniProt is to provide the scientific community with a comprehensive, high-quality and freely accessible resource of protein sequence and functional information. Manually annotated and reviewed. Records with information extracted from literature and curator-evaluated computational analysis.

20 Similar Question Found

What kind of information is in uniprot database?

UniProt is a freely accessible database of protein sequence and functional information, many entries being derived from genome sequencing projects. It contains a large amount of information about the biological function of proteins derived from the research literature.

What do you need to know about the uniprot database?

UniProt Knowledgebase (UniProtKB) is the central access point for extensive curated protein information, including function, classification, and cross- reference. The database is divided into two section UniProtKB/Swiss-Prot which is manually curated and UniProtKB/TrEMBL which is automatically maintained.

Is the uniprot database the same as uniref?

The UniRef databases cluster sequence sets at various levels of sequence identity and the UniProt Archive (UniParc) delivers a complete set of known sequences, including historical obsolete sequences.

What kind of database is uniprot knowledgebase?

UniProt Knowledgebase (UniProtKB) is a protein database partially curated by experts, consisting of two sections: UniProtKB/Swiss-Prot (containing reviewed, manually annotated entries) and UniProtKB/TrEMBL (containing unreviewed, automatically annotated entries).

How are protein sequences merged in uniprot database?

Identical sequences are merged, regardless of whether they are from the same or different species. Each sequence is given a stable and unique identifier (UPI), making it possible to identify the same protein from different source databases. UniParc contains only protein sequences, with no annotation.

What can i do with the uniprot database?

You can send us general questions and suggestions , updates or corrections to UniProt or submit new protein sequence data . All databases and documents in the UniProt FTP directory and web sites are distributed under the Creative Commons Attribution-NoDerivs License.

Is the uniprot database redundant or non redundant?

The UniProt Reference Clusters (UniRef) provide clustered sets of sequences from the UniProt Knowledgebase (including isoforms) and selected UniParc records. The UniProt Archive (UniParc) is a comprehensive and non-redundant database that contains most of the publicly available protein sequences in the world.

What kind of database is the uniprot archive?

xml| fasta. XML schema. UniParcThe UniProt Archive (UniParc) is a comprehensive and non-redundant database that contains most of the publicly available protein sequences in the world. Proteins may exist in different source databases and in multiple copies in the same database.

What is the purpose of the uniprot database?

UniProt is a long-standing collection of databases that enable scientists to navigate the vast amount of sequence and functional information available for pro- teins. The UniProt Knowledgebase (UniProtKB) is the central resource that combines UniProtKB/Swiss-Prot and UniProtKB/TrEMBL.

Where can i get database identifiers for uniprot?

Alternatively, you can download the data underlying our database identifier service mapping service from https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/idmapping/ Related terms: programmatic access, program, script, wget, curl, web services, API, uploadlists

How many sequences are there in the uniprot database?

The UniProt knowledgebase is a large resource of protein sequences and associated detailed annotation. The database contains over 60 million sequences, of which over half a million sequences have been curated by experts who critically review experimental and predicted data for each protein.

How is the uniprot protein sequence database maintained?

It is a high quality annotated and non-redundant protein sequence database, which brings together experimental results, computed features and scientific conclusions. Since 2002, it is maintained by the UniProt consortium and is accessible via the UniProt website.

How many proteins are there in the uniprot database?

The UniProt Knowledgebase is a collection of sequences and annotations for over 120 million proteins across all branches of life. Detailed annotations extracted from the literature by expert curators have been collected for over half a million of these proteins.

Is the uniprot database accurate at the time of writing?

Uniprot is an active database with on-going data input and curation. Thus numbers are accurate at the time of writing but may vary over time. Q1 (i) Using the simple search do a search for Human. Find out how many UniProtKB entries are hit?

How to access the uniprot database in python?

uniprot provides a command-line and python interface to access the uniprot database map map a list of ids from one format onto another using uniprots mapping api retrieve request entries by uniprot acc using batch retrieval This will read UniprotIDs seperated by whitespaces from acc_file and store them to map_file.

How to save proteins in the uniprot database?

When browsing through different UniProt proteins, you can use the 'basket' to save them, so that you can back to find or analyse them later. More... The taxonomy database that is maintained by the UniProt group is based on the NCBI taxonomy database, which is supplemented with data specific to the UniProt Knowledgebase (UniProtKB).

What kind of database is the uniprot consortium?

The UniProt Consortium is a collabora- Swiss Institute of Bioinformatics (SIB). The core to other databases. UniProt is comprised of four Sequences database. UniProt is updated and a wealth of data to analyze and use. There is a widely ing and standardizing data from these various sources.

Which is the best description of the uniprot database?

UniProt will build upon the solid foundations laid by the consortium members over many years. The UniProt databases consist of three database layers: (i) The UniProt Archive (UniParc) provides a stable, comprehensive, non‐redundant sequence collection by storing the complete body of publicly available protein sequence data.

What is the use of a basket in the uniprot protein database?

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser. When browsing through different UniProt proteins, you can use the 'basket' to save them, so that you can back to find or analyse them later. More...

What is the best way to download data from uniprot to an external database?

You can use the ‘Retrieve/ID Mapping’ feature in UniProt to download UniProt entries corresponding to a list of UniProt accessions. You can also use this feature to convert database identifiers from UniProt to external databases or vice versa. If playback doesn't begin shortly, try restarting your device.